You focus on your sales; We’ll handle the Shopify Accounting and tax compliance

You don't have to keep guessing your margins or worrying about your ecommerce business's financial health. At NetDeposited, we combine our award-winning expertise with QuickBooks Online automation to handle your accounting and bookkeeping, inventory management, and cash flow.

Accurate numbers, happy founders - that’s what it means to be accounted for

"NetDeposited has been GREAT for our company. Rachel, Jamie, and the entire team are super detailed and professional. They have really cleaned up our QuickBooks and bookkeeping."

Adam L.

Reclaim your time with automated Shopify accounting and stress-free tax compliance

Growing your Shopify store is exciting—until the paperwork catches up.

You started your ecommerce business because you’re passionate about your products and your customers, not because you wanted to spend your nights staring at accounting software or looking up the best accounting tools. But as the orders pour in, the back office work starts to feel like a mountain. Between all of the financial transactions, expense tracking, Shopify payouts that don't quite match your bank deposits, and the mystery of financial records, it’s easy to feel like you’re losing control of your time.

We’re your automation wizards for all things Shopify. At NetDeposited, we take the complexity out of ecommerce accounting. We specialize in helping US-based sellers move from basic accounting and bookkeeping to professional controllership, so you can stay focused on selling.

A florist owner feeling at peace knowing they have accurate bookkeeping for their business accounting.

Cutting-edge cloud accounting to make your life easier

As an Intuit Top 100 ProAdvisor for 2025 and a Bookkeep Verified Integrator, we’ll help you master your Shopify business with:

Total Shopify Integration

You can say goodbye to long nights of checking financial statements and staring at your accounting system as we sync QuickBooks Online with your store to automate settlement syncing, chargebacks, and inventory management.

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50-State Tax Peace of Mind

You can have peace of mind as we specialize in tax compliance across every state, ensuring your sales tax and income tax prep are always handled.

Clarity Through Data

From accrual accounting to custom financial reports, when it comes to your business finances, we give you the real numbers you need to scale your brand.

Why our expertise is your competitive advantage

We’ve done the hard work to earn these credentials so that you can have total confidence in your numbers. Here is what our seal of approval means for your business:

Intuit Top 100 ProAdvisor (2025)

You aren’t just getting a bookkeeper; you’re getting a nationally recognized strategist. This award proves we are at the cutting edge of the latest tax laws, Shopify trends, accounting methods, and financial health strategies. You get elite-level guidance that helps you stay ahead of the curve.

QuickBooks Advanced ProAdvisor

We know QuickBooks Online cloud-based accounting software inside and out. This means your accounting and bookkeeping are set up correctly from day one. Just clean, audit-ready, accurate financial statements and the peace of mind that your data is handled by a certified expert.

Bookkeep Verified Integrator

As a Verified Integrator, we ensure your settlement automation and inventory management are perfectly synced. It means fewer manual errors, no more missing data, and a fully automated accounting system that saves you hours of work every week.

A pottery business owner is speaking on the phone to accountant about their cloud accounting software and holding their pottery.

Shopify Accounting Services

Tailored solutions for your Shopify growth

From daily bookkeeping to high-level financial strategy, we’ve got your back.

Automated Settlement & Payout Syncing

Using Bookkeep-verified integrations, we automate your settlement automation and payment gateway syncing. We ensure your financial transactions from Shopify, PayPal, and Stripe match your bank account perfectly.

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50-State Sales Tax Automation

We handle your sales tax automation and setup across all 50 states, ensuring you stay in total sales tax compliance as you expand into new markets.

Inventory Management System & COGS Mastery

Get a true handle on your margins. We specialize in Shopify inventory and COGS automation, moving you toward accrual accounting so you know exactly what your profit looks like after every sale.

Chargeback & Payment Management

Ecommerce moves fast. We help you with understanding chargebacks and managing multiple payment methods, ensuring your financial reports reflect the reality of your business—fees and all.

From Bookkeeping to Controllership

As your business scales, your needs change. We offer everything from accurate accounting and bookkeeping to full controllership services. We provide the high-level financial data and cash flow insights you need to make big moves with confidence.

More than just a client list—a community of sellers who are accounted for

"Love this team!!! They take the dread out of the financials for my small business."

Janine J.

Ready to stop guessing and start growing?

You’ve built something amazing with your Shopify store. Let our experienced team handle the Shopify accounting, inventory management, and 50-state tax compliance so you can get back to what you do best: building your brand.